Planned statistical tests

This table includes statistical tests that will be implemented within this package.

Statistical test	R src location	Python test link	Python library	Notes
Multiple exact binomial tests	edgeR/R/binomTest.R	https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.binom_test.html	scipy
F test	edgeR/R/decidetestsDGE.R	https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.f.html	scipy
Linear Modelling	limma/R/lmfit.R	https://docs.scipy.org/doc/scipy-0.14.0/reference/generated/scipy.stats.linregress.html	scipy	lmFit and contrasts. fit
Negative Binomial	edgeR/R/glmfit.R	https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.nbinom.html	scipy
Z score of Binomial	edgerR/R/zscoreNBinom.R	https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.zscore.html	scipy	Tentative / Not sure if this is the same as scipy zscore
Quasi-Likelihood GLM tests	edgeR/R/glmQLFTest.R	https://docs.pymc.io/notebooks/GLM-negative-binomial-regression.html	MC3	Tentative
Exact conditional likelihood	edgeR/R/estimateCommonDisp.R	couldnt find it on scipy	n/a	Very important for DE
Weighted conditional likelihood empirical Bayes	edgeR/R/estimateTagwiseDisp.R	couldnt find it on scipy	n/a	Very important for DE